Kadelka, C. ., Murrugarra, D. ., & Laubenbacher, R. . (2013). Stabilizing gene regulatory networks through feedforward loops. Chaos (Woodbury, N.Y.), 23(2), 025107. https://doi.org/10.1063/1.4808248

Murrugarra, D. ., Veliz-Cuba, A. ., Aguilar, B. ., Arat, S. ., & Laubenbacher, R. . (2012). Modeling stochasticity and variability in gene regulatory networks. EURASIP Journal on Bioinformatics & Systems Biology, 2012(1), 5. https://doi.org/10.1186/1687-4153-2012-5 (Original work published 2012)

Murrugarra, D. ., & Laubenbacher, R. . (2011). Regulatory patterns in molecular interaction networks. Journal of Theoretical Biology, 288, 66-72. https://doi.org/10.1016/j.jtbi.2011.08.015 (Original work published 2011)

Hinkelmann, F. ., Murrugarra, D. ., Jarrah, A. ., & Laubenbacher, R. . (2011). A mathematical framework for agent based models of complex biological networks. Bulletin of Mathematical Biology, 73(7), 1583-602. https://doi.org/10.1007/s11538-010-9582-8

Murrugarra, D. ., & Dimitrova, E. . (2015). Molecular network control through boolean canalization. EURASIP Journal on Bioinformatics & Systems Biology, 2015(1), 9. https://doi.org/10.1186/s13637-015-0029-2

Murrugarra, D. ., Veliz-Cuba, A. ., Aguilar, B. ., & Laubenbacher, R. . (2016). Identification of control targets in Boolean molecular network models via computational algebra. BMC Systems Biology, 10(1), 94. https://doi.org/10.1186/s12918-016-0332-x (Original work published 2016)

Murrugarra, D. ., Miller, J. ., & Mueller, A. . Estimating Propensity Parameters Using Google PageRank and Genetic Algorithms. Frontiers in Neuroscience, 10, 513. https://doi.org/10.3389/fnins.2016.00513 (Original work published 2016)

Rogers, E. ., Murrugarra, D. ., & Heitsch, C. . (2017). Conditioning and Robustness of RNA Boltzmann Sampling under Thermodynamic Parameter Perturbations. Biophysical Journal, 113(2), 321-329. https://doi.org/10.1016/j.bpj.2017.05.026 (Original work published 2017)

Voss, R. ., Murrugarra, D. ., Jensen, T. ., & . (2018). Transcriptional correlates of proximal-distal identify and regeneration timing in axolotl limbs. Comparative Biochemistry and Physiology. Toxicology & Pharmacology : CBP, 208, 53-63. https://doi.org/10.1016/j.cbpc.2017.10.010

Vieira, S. ., Laubenbacher, R. ., & Murrugarra, D. . (2019). Control of Intracellular Molecular Networks Using Algebraic Methods. Bulletin of Mathematical Biology, 82(1), 2. https://doi.org/10.1007/s11538-019-00679-w (Original work published 2019)